PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G006600.4
Common NameB456_010G006600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 187aa    MW: 20956.7 Da    PI: 5.9617
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G006600.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-07443538
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         C+ + ++e++ fC+ ++  lC+ C    H+       H+
  Gorai.010G006600.4  4 QCDVCYKEEATVFCTADEAALCDACDHRVHHAnklaskHQ 43
                        7***************************964446666665 PP

2zf-B_box30.29.2e-105694238
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                        + + C+ ++ek++ lfC++++  lC+dC + +H+   Ht
  Gorai.010G006600.4 56 QVPLCDICQEKRAFLFCQQDRAILCRDCDVPIHSAneHT 94
                        6789*****************************657765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.907147IPR000315B-box-type zinc finger
CDDcd000214.84E-5347No hitNo description
PfamPF006435.5E-6443IPR000315B-box-type zinc finger
SMARTSM003364.9E-7447IPR000315B-box-type zinc finger
PROSITE profilePS5011910.16855102IPR000315B-box-type zinc finger
SMARTSM003366.0E-1655102IPR000315B-box-type zinc finger
PfamPF006433.4E-85694IPR000315B-box-type zinc finger
CDDcd000212.99E-958102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKIQCDVCYK EEATVFCTAD EAALCDACDH RVHHANKLAS KHQRFTLLHP CSSSKQVPLC  60
DICQEKRAFL FCQQDRAILC RDCDVPIHSA NEHTQRHNRF LLTDFNPSSN EVDGSTSSIS  120
EYLIEMLPGW HVEDLLDSSP SLSPIGFCKN DDGMLPFSDP SQSLYHLPQM EGPIGLKETT  180
MKGNKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448517.11e-131PREDICTED: B-box zinc finger protein 21-like, partial
SwissprotQ9LQZ71e-67BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A0D2SKG91e-138A0A0D2SKG9_G
STRINGBra015835.1-P1e-68(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.14e-64salt tolerance homolog2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]